Publications
2023
- Leister D (2023) Enhancing the light reactions of photosynthesis: Strategies, controversies, and perspectives. Mol Plant, 16: 4-2.
- Leister D, Sharma A, Kerber N, Nägele T, Reiter B, Pasch V, Beeh S, Jahns P, Barbato R, Pribil M, Rühle T (2023) An ancient metabolite damage-repair system sustains photosynthesis in plants. Nat Ccommun 14: 3023.
- Bellin L, Garza Amaya DL, Scherer V, Pruss T, John A, Richter A, Möhlmann T (2023) Nucleotide imbalance, provoked by downregulation of Aspartate Transcarbamoylase impairs cold acclimation in Arabidopsis. Molecules 28: 1585.
- Xu D, Tang Q, Xu P, Schaffner AR, Leister D, Kleine T (2023) Response of the organellar and nuclear (post)transcriptomes of Arabidopsis to drought. Front Plant Sci 14: 1220928.
- Teh JT, Leitz V, Holzer VJC, Neusius D, Marino G, Meitzel T, Garcia-Cerdan, JG, Dent RM, Niyogi KK, Geigenberger P, Nickelsen J (2023) NTRC regulates CP12 to activate Calvin-Benson cycle during cold acclimation. Proc Natl Acad Sci USA 120: e2306338120.
- Bohne A-V, Nickelsen J (2023) Control of organellar gene expression by nucleus-encoded proteins. In: Grossman A. and Wollman F-A. (eds) The Chlamydomonas Sourcebook Vol. 2 (3rd edition). Acad Press, 443-466.
- Ries F, Weil HL, Herkt C, Mühlhaus T, Sommer F, Schroda M, Willmund F (2023) Competition co-immunoprecipitation reveals the interactors of the chloroplast CPN60 chaperonin machinery. Plant Cell Environ doi: 10.1111/pce.14697.
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Willmund F, Hauser C, Zerges W (2023) Chapter 24 – Translation and protein synthesis in the chloroplast. In A. R. Grossman & F.-A. Wollman (Eds.), The Chlamydomonas Sourcebook (Third Edition) (pp. 467-508) London: Academic Press.
- Aarabi F, Fernie AR (2023) Elucidating the role of ascorbate in light signaling. Trends in Plant Sci https://doi.org/10.1016/j.tplants.2023.05.007
- Aarabi F, Ghigi A, Wijesingha Ahchige M, Bulut M, Geigenberger P, Neuhaus HE, Sampathkumar A, Alseekh S, Fernie AR (2023) Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiol https://doi.org/10.1093/plphys/kiad323
- Vicente AM, Manavski N, Rohn PT, Schmid LM, Garcia-Molina A, Leister D, Seydel C, Bellin L, Möhlmann T, Ammann G, Kaiser S, Meurer J (2023) The plant cytosolic m6A RNA methylome stabilizes photosynthesis in the cold. Plant Commun doi: 10.1016/j.xplc.2023.100634, in press
- Bellin L, Melzer M, Hilo A, Amaya DLG, Keller I, Meurer J, Möhlmann T (2023) Nucleotide limitation results in impaired photosynthesis, reduced growth and seed yield together with massively altered gene expression Plant Cell Physiol pcad063
- Schmid LM, Manavski N, Chi W, Meurer J. (2023) Chloroplast Ribosome Biogenesis Factors. Plant Cell Physiol doi: 10.1093/pcp/pcad082, in press
- Ji D, Luo M, Guo Y, Li Q, Kong L, Ge H, Wang Q, Song Q, Zeng X, Ma J, Wang Y, Meurer J, Chi W (2023) Efficient scavenging of reactive carbonyl species in chloroplasts is required for light acclimation and fitness of plants. New Phytol, doi: 10.1111/nph.19156, in press
- Legen J, Dühnen S, Gauert A, Götz M, Schmitz-Linneweber C (2023) A CRR2-Dependent sRNA Sequence Supports Papillomavirus Vaccine Expression in Tobacco Chloroplasts. Metabolites 13: 315.
- Small I, Melonek J, Bohne AV, Nickelsen J, Schmitz-Linneweber C (2023) Plant Organellar RNA Maturation. Plant Cell 35:1727-1751.
- Smirnova J, Loerke J, Kleinau G, Schmidt A, Bürger J, Meyer EH, Mielke T, Scheerer P, Bock R, Spahn CMT, Zoschke, R (2023) Structure of the actively translating plant 80S ribosome at 2.2 Å resolution. Nat Plants 9: 987-1000.
- Lohmann J, de Luxán-Hernández C, Gao Y, Zoschke R, Weingartner M (2023) The Arabidopsis translation factor eEF1Bγ impacts plant development and associates with heat-induced cytoplasmic foci. J Exp Bot 74: 2585-2602.
- Ghandour R, Gao Y, Laskowski J, Barahimipour R, Ruf S, Bock R, Zoschke R (2023) Transgene insertion into the plastid genome alters expression of adjacent native chloroplast genes at the transcriptional and translational levels. Plant Biotechnol J 21: 711-725.
- Guo WJ, Pommerrenig B, Neuhaus HE, Keller I (2023) Interaction between sugar transport and plant development. Plant Physiol 288: 154073.
- Weiszmann J, Walther D, Clauw P, Back G, Gunis J, Reichardt I, Koemeda S, Jez J, Nordborg M, Schwarzerova J, Pierides I, Nägele T, Weckwerth W (2023) Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. Plant Physiol kiad298.
- Khan A, Cheng J, Kitashova A, Fürtauer L, Nägele T, Picco C, Scholz-Starke J, Keller I, Neuhaus HE, Pommerrenig B (2023) The vacuolar sugar transporter EARLY RESPONSE TO DEHYDRATION 6-LIKE4 influences fructose signaling and plant growth. Plant Physiol kiad403.
- Valifard M, Fernie AL, Kitashova A, Nägele T, Schröder R, Meinert M, Pommerrenig B, Mehner-Breitfeld D, Witte C-P, Brüser T, Keller I, Neuhaus HE (2023) The novel chloroplast glucose transporter pGlcT2 affects adaptation to extended light periods. J Biol Chem 299: 104741.
- Kreis E, Niemeyer J, Merz M, Scheuring D, Schroda M (2023) CLPB3 is required for the removal of chloroplast protein aggregates and for thermotolerance in Chlamydomonas. J Exp Bot 74: 3714-3728.
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Wang F, Dischinger K, Westrich LD, Meindl I, Egidi F, Trosch R, Sommer F, Johnson X, Schroda M, Nickelsen J, Willmund F, Vallon O, Bohne AV (2023) One-helix protein 2 is not required for the synthesis of photosystem II subunit D1 in Chlamydomonas. Plant Physiol 191: 1612-1633.
- Richter AS, Nagele T, Grimm B, Kaufmann K, Schroda M, Leister D, Kleine T (2023) Retrograde signaling in plants: A critical review focusing on the GUN pathway and beyond. Plant Commun 4: 100511
- Schroda M, deVitry C (2023). Chapter 20 - Molecular chaperones, proteases, and unfolded protein responses. In A. R. Grossman & F.-A. Wollman (Eds.), The Chlamydomonas Sourcebook (Third Edition) (pp. 647-689). London: Academic Press.
- Fu HY, Ghandour R, Ruf S, Zoschke R, Bock R, Schöttler MA (2021) The availability of neither D2 nor CP43 limits the biogenesis of photosystem II in tobacco. Plant Physiol 185: 1111-1130.
2022
- Leister D, Marino G, Minagawa J, Dann M (2022) An ancient function of PGR5 in iron delivery?. Trends in Plant Sci 27: 971-980.
- Wang L, Xu D, Scharf K, Frank W, Leister D, Kleine T (2022) The RNA-binding protein RBP45D of Arabidopsis promotes transgene silencing and flowering time. Plant J 109: 1397-1415.
- Kleine T (2022) Arabidopsis thaliana FLOWERING LOCUS M: A direct target of RBP45d? Plant Cell 34: 4138-4140.
- Neusius D, Kleinknecht L, Teh JT, Ostermeier M, Kelterborn S, Eirich J, Hegemann P, Finkemeier I, Bohne A-V, Nickelsen J (2022) Lysine acetylation regulates moonlighting activity of the E2 subunit of the chloroplast pyruvate dehydrogenase complex in Chlamydomonas. Plant J 111: 1780–1800.
- Füßl M, König A-C, Eirich J, Hartl A, Kleinknecht L, Bohne A-V, Harzen A, Kramer K, Leister D, Nickelsen J, Finkemeier I (2022) Dynamic light and acetate-dependent regulation of the proteome and lysine acetylome of Chlamydomonas. Plant J 109: 261-277.
- Carius Y, Ries F, Gries K, Trentmann O, Lancaster CRD, Willmund F (2022) Structural features of chloroplast trigger factor determined at 2.6 Å resolution. Acta Crystallogr D Struct Biol 1: 1259-1272.
- Niemeyer J, Schroda M (2022) New destination vectors facilitate Modular Cloning for Chlamydomonas. Current Genetics 68: 531-536
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Peter J, Huleux M, Spaniol B, Sommer F, Neunzig J, Schroda M, Li-Beisson Y, Philippar K (2022) Fatty acid export (FAX) proteins contribute to oil production in the green microalga Chlamydomonas reinhardtii. Front Mol Biosci 9: 939834
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Zhang N, Mattoon EM, McHargue W, Venn B, Zimmer D, Pecani K, Jeong J, Anderson CM, Chen C, Berry JC, Xia M, Tzeng SC, Becker E, Pazouki L, Evans B, Cross F, Cheng J, Czymmek KJ, Schroda M, Muhlhaus T, Zhang R (2022) Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii. Commun Biol 5: 460
- Schroda M, Remacle C (2022) Molecular Advancements Establishing Chlamydomonas as a Host for Biotechnological Exploitation. Front Plant Sci 13: 911483
- Kitashova A, Adler SO, Richter AS, Eberlein S, Dziubek D, Klipp E, Nägele T (2023). Limitation of sucrose biosynthesis shapes carbon partitioning during plant cold acclimation. Plant Cell and Environ 46: 464-478
- Araguirang GE, Richter AS (2022). Activation of anthocyanin biosynthesis in high light – what is the initial signal? New Phytol 236: 2037-2043.
- Zirngibl ME, AraguirangGE, Kitashova A, Jahnke k, Rolka T, Kühn Ch, Nägele T, Richter AS (2022). Triosephosphate export from chloroplasts and cellular sugar content regulate anthocyanin biosynthesis during high light acclimation. Plant Commun 4: 100423.
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Nägele T (2022) Metabolic regulation of subcellular sucrose cleavage inferred from quantitative analysis of metabolic functions. Quant Plant Biol 3: e10
- Ji, D, Li Q, Guo Y, An W, Manavski N, Meurer J, Wei C (2022) NADP+ Supply Adjusts the Synthesis of Photosystem I in Arabidopsis Chloroplasts, Plant Physiol 189: 2128-2143.
- DeTar RA, Höhner R, Manavski N, Blackholm M, Meurer J, Kunz HH (2022) Loss of salt overly sensitive 1 prevents virescence in chloroplast K+/H+ EFFLUX ANTIPORTER-deficient mutants. Plant Physiol 189: 1220-1225.
- Seydel C, Biener J, Brodsky V, Eberlein S, Nägele T (2022) Predicting plant growth response under fluctuating temperature by carbon balance modelling. Commun Biol 5: 164.
- Okooboh G, Haferkamp I, Valifard M, Pommerrenig B, Kelly A, Feussner I, Neuhaus E (2022) Overexpression of the vacuolar sugar importer BvTST1 from sugar beet in Camelina improves seed properties and leads to altered root characteristics. Phys Plant 174: e13653.
- Trösch R, Ries F, Westrich LA, Gao Y, Herkt C, Hoppstädter J, Heck-Roth J, Mustas M, Scheuring YC, Räschle M, Zoschke R, Willmund F (2022) Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimation. Plant Cell 34: 1075-1099
- Schwenkert S, Fernie AR, Geigenberger P, Leister D, Möhlmann T, Naranjo B, Neuhaus HE (2022) Chloroplasts are key players to cope with light and temperature stress. Trends Plant Sci 21: S1360-1385
- Seydel C, Kitashova A, Fürtauer L, Nägele T (2022) Temperature-induced dynamics of plant carbohydrate metabolism. Physiol Plant 174: e13602
- Spaniol B, Lang J, Venn B, Schake L, Sommer F, Mustas M, Geimer S, Wollman FA, Choquet Y, Mühlhaus T, Schroda M (2022) Complexome profiling on the Chlamydomonas lpa2 mutant reveals insights into PSII biogenesis and new PSII associated proteins. J Expt Bot 73: 245-262
- Loiacono VF, Walther D, Seeger S, Thiele W, Gerlach I, Karcher D, Schöttler MA, Zoschke R, Bock R (2022) Emergence of novel RNA editing sites by changes in the binding affinity of a conserved PPR protein. Mol Biol Evol 39: 12.
Sandoval-Ibáñez O, Rolo, D, Ghandour R, Hertle AP, Armarego-Marriott T, Sampathkumar A, Zoschke R, Bock R (2022) De-etiolation-induced protein 1 (DEIP1) mediates assembly of the cytochrome b6f complex in Arabidopsis. Nat Commun 13: 4045.
Gao Y, Thiele W, Saleh O, Scossa F, Arabi F, Zhang H, Sampathkumar A, Kühn K, Fernie A, Bock R, Schöttler MA, Zoschke R (2023) Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation. Plant Cell 34: 2056-2079.
Trösch R, Ries F, Westrich LD, Gao Y, Herkt C, Hoppstädter J, Heck-Roth J, Mustas M, Scheuring D, Choquet Y, Räschle M, Zoschke R, Willmund F (2022) Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimation. Plant Cell 34: 1075-1099.
- Penzler JF, Marino G, Reiter B, Kleine T, Naranjo B, Leister D (2022) Commonalities and specialties in photosynthetic functions of PROTON GRADIENT REGULATION5 variants in Arabidopsis. Plant Physiol 190: 1866–1882.
2021
- Garcia-Molina A, Lehmann M, Schneider K, Klingl A, Leister D (2021) Inactivation of cytosolic FUMARASE2 enhances growth and photosynthesis under simultaneous copper and iron deprivation in Arabidopsis. Plant J 106:766-784.
- Dann M, Ortiz E M, Thomas M, Guljamow A, Lehmann M, Schaefer H, Leister D (2021) Enhancing photosynthesis at high light levels by adaptive laboratory evolution. Nat Plants 7: 681-695.
- Wang L, Kleine T (2021) Singlet oxygen and protochlorophyllide detection in Arabidopsis thaliana. Methods Mol Biol 2202: 63-69.
- Westrich LD, Gotsmann VL, Herkt C, Ries F, Kazek T, Trösch R, Armbruster L, Mühlenbeck JS, Ramundo S, Nickelsen J, Finkemeier I, Wirtz M, Storchová Z, Räschle M, Willmund F (2021) The versatile interactome of chloroplast ribosomes revealed by affinity purification mass spectrometry. Nucleic Acids Res 11: 400-415.
- Manavski N, Vicente A, Chi W, Meurer J (2021) The Chloroplast Epitranscriptome: Factors, Sites, Regulation, and Detection Methods. Genes (Basel) 12: 1121.
- Bellin L, Scherer V, Dörfer E, Lau A, Vicente AM, Meurer J, Hickl D, Möhlmann T (2021) Cytosolic CTP Production Limits the Establishment of Photosynthesis in Arabidopsis. Front Plant Sci 12: 789189.
- DeTar RA, Barahimipour R, Manavski N, Schwenkert S, Höhner R, Bölter B, Inaba T, Meurer J, Zoschke R, Kunz HH (2021) Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression. Plant Cell 33: 2479-2505.
- Gupta TK, Klumpe S, Gries K, Heinz S, Wietrzynski W, Ohnishi N, Niemeyer J, Spaniol B, Schaffer M, Rast A, Ostermeier M, Strauss M, Plitzko JM, Baumeister W, Rudack T, Sakamoto W, Nickelsen J, Schuller JM, Schroda M, Engel BD (2021) Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity. Cell 184: 3643-3659.
- Niemeyer J. Scheuring D, Oestreicher J, Morgan B, Schroda M (2021) Real-time monitoring of subcellular H2O2 distribution in Chlamydomonas reinhardtii. Plant Cell 33: 2935-2949.
- Wang N, Wang Y, Zhao Q, Zhang X, Peng C, Zhang W, Liu Y, Vallon O, Schroda M, Cong Y, Liu C (2021) The cryo-EM structure of the chloroplast ClpP complex. Nat Plants 7: 1505-1515.
- Kleine T, Nägele T, Neuhaus HE, Schmitz-Linneweber C, Fernie AR, Geigenberger P, Grimm B, Kaufmann K, Klipp E, Meurer J, Möhlmann T, Mühlhaus T, Naranjo B, Nickelsen J, Richter A, Ruwe H, Schroda M, Schwenkert S, Trentmann O, Willmund F, Zoschke R, Leister D (2021). Acclimation in plants - the Green Hub consortium. Plant J 106: 23-40.
- Krantz M, Zimmer D, Adler SO, Kitashova A, Klipp E, Mühlhaus T, Nägele T (2021). Data Management and Modeling in Plant Biology. Frontiers in Plant Sci 12: 1786.
- Bellin L, Del Caño-Ochoa F, Velázquez-Campoy A, Möhlmann T, Ramón-Maiques S (2021) Mechanisms of feedback inhibition and sequential firing of active sites in plant aspartate transcarbamoylase. Nat Commun 12: 947.
- Cvetkovic J, Haferkamp I, Rode R, Keller I, Pommerrenig B, Trentmann O, Altensell J, Fischer-Stettler M, Eicke S, Zeeman SC, Neuhaus HE (2021) Ectopic yeast maltase in mex1-1 chloroplasts alleviates the dwarf phenotype and improves plant frost tolerance. Plant Physiol 186: 315-329.
- Méteignier LV, Ghandour R, Zimmerman A, Kuhn L, Meurer J, Zoschke R, Hammani K (2021) Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivo. Nucleic Acids Res 49:1114-1132.
- Ann DeTar R, Barahimipour R, Manavski N, Schwenkert S, Höhner R, Bölter B, Inaba T, Meurer J, Zoschke R, Kunz HH (2021) Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression. Plant Cell 33: 2479-2505.
- Krantz M, Legen J, Gao Y, Zoschke R, Schmitz-Linneweber C, Klipp E (2021) Modeling indicates degradation of mRNA and protein as a potential regulation mechanisms during cold acclimation. J Plant Res 134: 873-883.
- Naranjo B, Penzler JF, Rühle T, Leister D (2021) NTRC Effects on Non-Photochemical Quenching Depends on PGR5. Antioxidants 10: 900.
- Rühle T, Dann M, Reiter B, Schünemann D, Naranjo B, Penzler JF, Kleine T, Leister D (2021) PGRL2 triggers degradation of PGR5 in the absence of PGRL1. Nat Commun, 12: 3941.
- Okuzaki A, Rühle T, Leister D, Schmitz-Linneweber C. (2021) The acidic domain of the chloroplast RNA-binding protein CP31A supports cold tolerance in Arabidopsis thaliana. J Exp Bot 72: 4904-4914.
- Li M, Ruwe H, Melzer M, Junker A, Hensel G, Tschiersch H, Schwenkert S, Chamas S, Schmitz-Linneweber C, Börner T, Stein N (2021) The Arabidopsis AAC Proteins CIL and CIA2 Are Sub-functionalized Paralogs Involved in Chloroplast Development. Front Plant Sci 12: 681375.
2020
- Garcia-Molina A, Marino G, Lehmann M, Leister D (2020) Systems biology of responses to simultaneous copper and iron deficiency in Arabidopsis. Plant J 103: 2119-2138.
- Teubner M, Lenzen B, Espenberger LB, Fuss J, Nickelsen J, Krause K, Ruwe H, Schmitz-Linneweber C (2020) The Chloroplast Ribonucleoprotein CP33B Quantitatively Binds the psbA mRNA. Plants 9: 367.
- Watkins KP, Williams-Carrier R, Chotewutmontri P, Friso G, Teubner M, Belcher S, Ruwe H, Schmitz-Linneweber C, van Wijk KJ, Barkan A (2020) Exploring the proteome associated with the mRNA encoding the D1 reaction center protein of Photosystem II in plant chloroplasts. Plant J 102: 369-382.
- Szabo EX, Reichert P, Lehniger MK, Ohmer M, de Francisco Amorim M, Gowik U, Schmitz-Linneweber C, Laubinger S (2020) Metabolic Labeling of RNAs Uncovers Hidden Features and Dynamics of the Arabidopsis Transcriptome. Plant Cell 32: 871-887.
- Lenzen B, Rühle T, Lehniger MK, Okuzaki A, Labs M, Muino JM, Ohler U, Leister D, Schmitz-Linneweber C (2020) The Chloroplast RNA Binding Protein CP31A Has a Preference for mRNAs Encoding the Subunits of the Chloroplast NAD(P)H Dehydrogenase Complex and Is Required for Their Accumulation. Int J Mol Sci 21: 5633.
- Méteignier LV, Ghandour R, Meierhoff K, Zimmerman A, Chicher J, Baumberger N, Alioua A, Meurer J, Zoschke R, Hammani K (2020) The Arabidopsis mTERF-repeat MDA1 protein plays a dual function in transcription and stabilization of specific chloroplast transcripts within the psbE and ndhH operons. New Phytol 227: 1376-1391.
- Zou M, Mu Y, Chai X, Ouyang M, Yu LJ, Zhang L, Meurer J, Chi W (2020) Nucleic Acids Res 48: 3195-3210.
- Kitashova A, Schneider K, Fürtauer L, Schröder L, Scheibenbogen T, Fürtauer S, Nägele T (2020) Impaired chloroplast positioning affects photosynthetic capacity and regulation of the central carbohydrate metabolism during cold acclimation. Photosyn Res 147: 49-50.
- Schneider K, Abazaj L, Niemann C, Schröder L, Nägele T (2020) Cold acclimation has a differential effect on leaf vascular bundle structure and carbon export rates in natural Arabidopsis accessions originating from southern and northern Europe. Plant Direct 4: e00251.
- Atanasov V, Fürtauer L, Nägele T (2020) Indications for a central role of hexokinase activity in natural variation of heat acclimation in Arabidopsis thaliana. Plants 9: 819.
- Habermann K, Tiwari B, Krantz M, Adler SO, Klipp E, Arif MA, Frank W (2020) Identification of small non-coding RNAs responsive to GUN1 and GUN5 related retrograde signals in Arabidopsis thaliana. Plant J 104: 135-155.
- Wang L, Leister D, Guan L, Zheng Y, Schneider K, Lehmann M, Apel K, Kleine T (2020) The Arabidopsis SAFEGUARD1 suppresses singlet oxygen-induced stress responses by protecting grana margins.
Proc Natl Acad Sci USA 117: 6918-6927. - Garcia-Molina A, Kleine T, Schneider K, Mühlhaus T, Lehmann M, Leister D (2020) Translational components contribute to acclimation responses to high light, heat, and cold in Arabidopsis. iScience 23: 101331
- Schroda M (2020) Phosphoinositides regulate chloroplast processes. Proc Natl Acad Sci USA 117: 9154-9156.
- Hammel A, Sommer F, Zimmer D, Stitt M, Muhlhaus T, Schroda M (2020) Overexpression of Sedoheptulose-1,7-Bisphosphatase Enhances Photosynthesis in Chlamydomonas reinhardtii and Has No Effect on the Abundance of Other Calvin-Benson Cycle Enzymes. Front Plant Sci 11: 868.
- Rosado-Souza, Fernie RA, Aarabi F (2020) Ascorbate and thiamin: metabolic modulators in plant acclimation responses. Plants 9: E101.
- Teubner M, Lenzen B, Espenberger B, Fuss J, Nickelsen J, Krause K, Ruwe H, Schmitz-Linneweber(2020) The chloroplast ribonucleoprotein CP33B quantitatively co-precipitates the psbA mRN. BioRxiv 944249.
- Ries F, Herkt C and Willmund F (2020) Co-translational protein folding and sorting in chloroplasts. Plants 9: 214.
- Westrich LD, Gotsmann VL, Herkt C, Ries F, Kazek T, Trösch R, Ramundo S, Nickelsen J, Armbruster L, Wirtz M, Storchova, Raeschle M, Willmund F (2020) The proteomic inventory reveals the chloroplast ribosome as nexus within a diverse protein network. BioRxiv 874503.
- Vu DP , Rodrigues CM, Jung B , Meissner G, Klemens PAW, Holtgräwe D Fürtauer L, Nägele T, Nieberl P, Pommerrenig B, Neuhaus HE (2020) Vacuolar sucrose homeostasis is critical for development, seed properties and survival of dark phases of Arabidopsis. BioRxiv 912253v1.
- Szabo EX, Reichert P, Lehniger MK, Ohmer M, de Francisco Amorim M, Gowik U, Schmitz-Linneweber C, Laubinger S (2020) Metabolic labeling of RNAs uncovers hidden features and dynamics of the Arabidopsis thaliana transcriptome. Plant Cell 32: 871-887.
- Adler SO, Klipp E (2020) Chemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality. Entropy 22: 117.
- Reiter B, Vamvaka E, Marino G, Kleine T, Jahns P, Bolle C, Leister D, Rühle T (2020) The Arabidopsis Protein CGL20 is Required for Plastid 50S Ribosome Biogenesis. Plant Physiol 182: 1222-1238.
- Eisa A, Malenica K, Schwenkert S, Bölter B (2020) High light acclimation induces chloroplast precursor phosphorylation and reduces import efficiency. Plants 9: E24.
- Theis J, Niemeyer J, Schmollinger S, Ries F, Rütgers M, Gupta TK, Sommer F, Muranaka LS, Venn B, Schulz-Raffelt M, Willmund F, Engel BD, Schroda M (2020) VIPP2 interacts with VIPP1 at chloroplast membranes and modulates a retrograde signal for HSP22E/F and LHCSR3 gene expression in Chlamydomonas reinhardtii. Plant Cell Environ 43: 1212-1229.
- Garcia-Molina A, Leister D (2020) Accelerated relaxation of photoprotection impairs biomass accumulation in Arabidopsis. Nat Plants 6: 9-12.
- Xu D, Leister D, Kleine T (2020) VENOSA4 and phytochrome B contribute to chloroplast development and abiotic stress tolerance. Plant Physiol 182: 721-729.
- Fernández-Marín B, Gulías J, Figueroa C.M, Íñiguez C, Clemente-Moreno MJ, Nunes-Nesi A, Fernie AR, Cavieres LA, Bravo L, García-Plazaola JI, Gago J (2020) How do vascular plants face photosynthesis in extreme environments? An integrative ecophysiological and biochemical story. Plant J 101: 979-1000.
- da Fonseca-Pereira P, Souza PVL, Hou L-Y, Schwab S, Geigenberger P, Nunes-Nesi A, Timm S, Fernie AR, Thormählen I, Araújo WL, Daloso DM (2020) Thioredoxin h2 contributes to the redox regulation of mitochondrial photorespiratory metabolism. Plant Cell Environ 43: 188-208.
- Xu D, Dhiman R, Garibay A, Mock HP, Leister D, Kleine T (2020) Cellulose defects in the Arabidopsis secondary cell wall promote early chloroplast development. Plant J 101: 156-170.
- Tiwari B, Habermann K, Arif MA, Weil HL, Garcia-Molina A, Kleine T, Mühlhaus T, Frank W (2020) Identification of small RNAs during cold acclimation in Arabidopsis thaliana. BMC Plant Biol 20: 298.
2019
- Tabatabaei I, Dal Bosco C, Bednarska M, Ruf S, Meurer J, Bock R (2019) A highly efficient sulfadiazine selection system for the generation of transgenic plants and algae. Plant Biotechnol 17: 638-649.
- Schroda M (2020) Good News for Nuclear Transgene Expression in Chlamydomonas. Cells 8: E1534
- Bölter B, Mitterreiter MJ, Schwenkert S, Finkemeier I, and Kunz H H (2019) The topology of plastid inner envelope 1 potassium cation efflux antiporter KEA1 provides new insights into its regulatory features. Photosyn Res 145: 43-54
- Krantz M, Klipp E (2019) Moonlighting proteins – an approach to systematize the concept. In Silico Biol 14: 1-13
- Okuzaki A, Lehniger MK, Muino JM, Lenzen B, Rühe T, Leister D, Ohler U, Schmitz-Linneweber C (2019) The Chloroplast RNA binding protein CP31A shows cold-dependent RNA association and mediates cold-resistance via its acidic domain. BioRxiv 832337
- Watkins KP, Williams-Carrier R. Chotewutmontri P,Teubner M, Friso G, Belcher S, Ruwe R, Schmitz-Linneweber C, van Wijk K, Barkan A (2019) Exploring the proteome associated with the mRNA encoding the D1 reaction center protein of Photosystem II in plant chloroplasts. Plant J 102: 369-382
- Dann M, Leister D (2019) Evidence that cyanobacterial Sll1217 functions analogously to PGRL1 in enhancing PGR5-dependent cyclic electron flow. Nat Commun 10: 5299
- Trentmann O, Mühlhaus T, Zimmer D, Sommer F, Schroda M, Haferkamp I, Keller I, Pommerrenig B, Neuhaus HE (2019) Identification of chloroplast envelope proteins with critical importance for cold acclimation of Arabidopsis. BioRxiv 813725
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- Richter AS, Grimm B (2019) The multifaceted regulation of 5-aminolevulinic acid synthesis. Numerous ways to control glutamyl-tRNA reductase. Academic Press 91: 69-88
- Grimm B (2019) Metabolism, structure and function of plant tetrapyrroles: control mechanisms of chlorophyll biosynthesis and analysis of chlorophyll-binding proteins. Serial Volume Editors: Bernhard Grimm, Academic Press Volume 91 ISBN: 9780128199824, 30th July 2019, 308 pages
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- Marino G, Naranjo B, Wang J, Penzler JF, Kleine T, Leister D (2019) Relationship of GUN1 to FUG1 in chloroplast protein homeostasis. Plant J 99: 521-535
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- Leister D (2019) Thawing out frozen metabolic accidents. BMC Biol 17: 8
- Leister D (2019) Piecing the puzzle together: the central role of reactive oxygen species and redox hubs in chloroplast retrograde signaling. Antioxid Redox Signal 30: 1206-1219
- Kacprzak SM, Mochizuki N, Naranjo B, Xu D, Leister D, Kleine T, Okamoto H, Terry MJ (2019) Plastid-to-nucleus retrograde signalling during chloroplast biogenesis does not require ABI4. Plant Physiol 179: 18-23
2018
- Qu Y, Legen J, Arndt J, Henkel S, Hoppe G, Thieme C, Ranzini G, Muino JM, Weihe A, Ohler U, Weber G, Ostersetzer O, Schmitz-Linneweber C (2018) Ectopic transplastomic expression of a synthetic MatK gene leads to cotyledon-specific leaf variegation. Front Plant Sci 9: 1453
- Crozet P, Navarro FJ, Willmund F, Mehrshahi P, Bakowski K, Lauersen KJ, Pérez-Pérez ME, Auroy P, Gorchs Rovira A, Sauret-Gueto S, Niemeyer J, Spaniol B, Theis J, Trösch R, Westrich LD, Vavitsas K, Baier T, Hübner W, de Carpentier F, Cassarini M, Danon A, Henri J, Marchand CH, de Mia M, Sarkissian K, Baulcombe DC, Peltier G, Crespo JL, Kruse O, Jensen PE, Schroda M, Smith AG, Lemaire SD (2018) Birth of a photosynthetic chassis: A MoClo toolkit enabling synthetic biology in the microalga chlamydomonas reinhardtii. ACS Synth Biol 7: 2074-2086
- Leister D (2018) Genetic engineering, synthetic biology and the light reactions of photosynthesis. Plant Physiol 179: 778-793
- Leister D (2018) Experimental evolution in photoautotrophic microorganisms as a means of enhancing chloroplast functions. Essays Biochem 62: 77-84
- Pribil M, Sandoval-Ibáñez O, Xu W, Sharma A, Labs M, Liu Q, Galgenmüller C, Schneider T, Wessels M, Matsubara S, Jansson S, Wanner G, Leister D (2018) Fine-tuning of photosynthesis requires CURVATURE THYLAKOID1-mediated thylakoid plasticity. Plant Physiol 176: 2351-2364
- Gawroński P, Jensen PE, Karpiński S, Leister D, Scharff LB (2018) Pausing of chloroplast ribosomes is induced by multiple features and is linked to the assembly of photosynthetic complexes. Plant Physiol 176: 2557-2569
- Pulido P, Leister D (2018) Novel DNAJ-related proteins in Arabidopsis thaliana. New Phytol 217: 480-490
- Manavski N, Schmid LM, Meurer J (2018) RNA-stabilization factors in chloroplasts of vascular plants. Essays Biochem 62: 51-64
- Rojas M, Ruwe H, Miranda RG, Zoschke R, Hase N, Schmitz-Linneweber C, Barkan A (2018) Unexpected functional versatility of the pentatricopeptide repeat proteins PGR3, PPR5 and PPR10. Nucl Acids Res 46: 10448-10459
- Ruwe H, Gutmann B, Schmitz-Linneweber C, Small I, Kindgren P (2018) The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids. New Phytol 222: 218-229
- Zoschke R, Bock R (2018) Chloroplast translation: structural and functional organization, operational control and regulation. Plant Cell 30: 745-770
- Richter AS, Pérez-Ruiz JM, Cejudo FJ, Grimm B (2018) Redox-control of chlorophyll biosynthesis mainly depends on thioredoxins FEBS Lett 592: 3111-3115
- Zimmer D, Schneider K, Sommer F, Schroda M, Mühlhaus T (2018) Artificial intelligence understands peptide observability and assists with absolute protein quantification. Front Plant Sci 13: 1559
- Paieri F, Tadini L, Manavski N, Kleine T, Ferrari R, Morandini P, Pesaresi P, Meurer J, Leister D (2018) The DEAD-box RNA helicase RH50 is a 23S-4.5S rRNA maturation factor that functionally overlaps with the plastid signaling factor GUN1. Plant Physiol 176: 634-648
- Trösch R, Barahimipour R, Gao Y, Badillo-Corona JA, Gotsmann VL, Zimmer D, Mühlhaus T, Zoschke R, Willmund F (2018) Commonalities and differences of chloroplast translation in a green alga and land plants. Nat Plants 4: 564-575
- Arif MA, Alseekh S, Harb J, Fernie A, and Frank W (2018) Abscisic acid, cold and salt stimulate conserved metabolic regulation in the moss Physcomitrella patens. Plant Biol 20: 1014-1022
- Patzke K, Prananingrum P, Klemens PAW, Trentman O, Rodriques CM, Keller I, Fernie AR, Geigenberger P, Bölter B, Lehmann M, Schmitz-Esser S, Pommerrenig B, Haferkamp I, Neuhaus HE (2018) The plastidic sugar transporter pSuT influences flowering and affects cold responses. Plant Physiol 179: 569-587
- Pommerrening B, Ludewig F, Cvetkovic J, Trentmann O, Klemens PAW, Neuhaus HE (2018) In concert: orchestrated changes in carbohydrate homeostasis are critical for plant abiotic stress tolerance. Plant Cell Physiol 59: 1290-1299
- Hammel A, Zimmer D, Sommer F, Mühlhaus T, Schroda, M (2018) Absolute quantification of major photosynthetic protein complexes in Chlamydomonas reinhardtii using quantification concatamers (QconCATs). Front Plant Sci 9: 1265
- Janowski M, Zoschke R, Scharff L, Martinez Jaime S, Ferrari C, Proost S, Ng Wei Xiong J, Omranian N, Musialak-Lange M, Nikoloski Z, Graf A, Schöttler MA, Sampathkumar A, Vaid N, Mutwil M (2018) AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. Plant J 2: 404-420
- Bölter B (2018) En route into chloroplasts: preproteins' way home. Photosynth Res 138: 263-275
- Law YS, Ngan L, Yan J, Kwok LY, Sun Y, Cheng S, Schwenkert S, Lim BL (2018) Multiple kinases can phosphorylate the N-terminal sequences of mitochondrial proteins in Arabidopsis thaliana. Front Plant Sci 9: 982
- Bölter, B, Seiler, F, Soll, J (2018) Analysis of Arabidopsis thaliana growth behavior in different light qualities. J Vis Exp 132: e57152.
- Schwenkert S, Dittmer S, Soll J (2018) Structural components involved in plastid protein import. Essays Biochem 62: 65-75
- Pulido P, Zagari N, Manavski N, Gawronski P, Matthes A, Scharff LB, Meurer J, Leister D (2018) CHLOROPLAST RIBOSOME ASSOCIATED supports translation under stress and interacts with the Ribosomal 30S subunit. Plant Physiol 177: 1539-1554
- Patil M, Seifert S, Seiler F, Soll J and Schwenkert S (2018) FZL is primarily localized to the inner chloroplast membrane however influences thylakoid maintenance. Plant Mol Biol 97: 421–433
- Chen YE, Yuan S, Lezhneva L, Meurer J, Schwenkert S, Mamedov F, Schroder WP (2018) The low molecular mass photosystem II Protein PsbTn is important for light acclimation. Plant Physiol 179: 1739-1753
2017
- Teubner M, Fuß J, Kühn K, Krause K, Schmitz-Linneweber C (2017) The RNA recognition motif protein CP33A is a global ligand of chloroplast mRNAs and is essential for plastid biogenesis and plant development. Plant J 89: 472-485
- Thormählen I, Zupok A, Rescher J, Leger J, Weissenberger S, Groysman J, Orwat A, Chatel-Innocenti G, Issakidis-Bourguet E, Armbruster U, Geigenberger P (2017) Thioredoxins play a crucial role in dynamic acclimation of photosynthesis in fluctuating light. Mol Plant 10: 168-182
- Sjuts I, Soll J, Bölter B (2017) Import of soluble proteins into chloroplasts and potential regulatory mechanisms. Front Plant Sci 8: 168
- Geigenberger P, Thormählen I, Daloso DM, Fernie AR (2017) The unprecedented versatility of the plant thioredoxin system. Trends Plant Sci 22: 249-262
- Xu D, Leister D, Kleine T (2017) Arabidopsis thaliana mTERF10 and mTERF11, but not mTERF12, are involved in the response to salt stress. Front Plant Sci 14: 1213
- Leister D, Wang L, Kleine T (2017) Organellar gene expression and acclimation of plants to environmental stress Front Plant Sci 8: 387
- Dann M, Leister D (2017) Enhancing (crop) plant photosynthesis by introducing novel genetic diversity. Phil Trans Royal Soc B 372: 1730
- Alagna F, Bellucci M, Leister D, Pompa A (2017) Editorial: Plastid proteostasis: relevance of transcription, translation, and post-translational modifications. Front Plant Sci 8: 1759
- Zagari N, Sandoval-Ibañez O, Sandal N, Su J, Rodriguez-Concepcion M, Stougaard J, Pribil M, Leister D, Pulido P (2017) SNOWY COTYLEDON 2 promotes chloroplast development and has a role in leaf variegation in both Lotus japonicus and Arabidopsis thaliana. Mol Plant 10: 721-734
- Ferrando A, Castellano MM, Lisón P, Leister D, Stepanova AN, Hanson J (2017) Editorial: Relevance of translational regulation on plant growth and environmental responses. Front Plant Sci 8: 2170
- Ojeda V, Pérez-Ruiz JM, González MC, Nájera VA, Sahrawy M, Serrato AJ, Geigenberger P, Cejudo FJ (2017) NADPH thioredoxin reductase C and thioredoxins act concertedly in seedling development. Plant Physiol 174: 1436-1448
- Legen J, Schmitz-Linneweber C (2017) Stable membrane-association of mRNAs in etiolated, greening and mature plastids. Int J Mol Sci 18: E1881
- Rütgers M, Muranaka LS, Mühlhaus T, Sommer F, Thoms S, Schurig J, Willmund F, Schulz-Raffelt M, Schroda M (2017) Substrates of the chloroplast small heat shock proteins 22E/F point to thermolability as a regulative switch for heat acclimation in Chlamydomonas reinhardtii. Plant Mol Biol 95: 579-591
- Ries F, Carius Y, Rohr M, Gries K, Keller S, Lancaster CRD, Willmund F (2017) Structural and molecular comparison of bacterial and eukaryotic trigger factors. Sci Rep 6: 10680
- Rütgers M, Muranaka LS, Schulz-Raffelt M, Thoms S, Schurig J, Willmund F, Schroda M (2017) Not changes in membrane fluidity but proteotoxic stress triggers heat shock protein expression in Chlamydomonas reinhardtii. Plant Cell Environ 40: 2987-3001
- Smaczniak C, Muiño JM, Chen D, Angenent GC, Kaufmann K (2017) Differences in DNA binding specificity of floral homeotic protein complexes predict organ-specific target genes. Plant Cell 29: 1822-1835
- Zoschke R, Chotewutmontri P, Barkan A (2017) Translation and co-translational membrane engagement of plastid-encoded chlorophyll-binding proteins are not influenced by chlorophyll availability in maize. Front Plant Sci 28: 385
- Scharff LB, Ehrnthaler M, Janowski M, Childs LH, Hasse C, Gremmels J, Ruf S, Zoschke R, Bock R (2017) Shine-dalgarno sequences play an essential role in the translation of plastid mRNAs in tobacco. Plant Cell 29: 3085-3101
- Meurer J, Schmid LM, Stoppel R, Leister D, Brachmann A, Manavski N (2017) PALE CRESS binds to plastid RNAs and facilitates the biogenesis of the 50S ribosomal subunit. Plant J 92: 400-413.
2016
- Bölter B, Soll J (2016) Ycf1/Tic214 is not essential for the accumulation of plastid proteins. Mol Plant 10: 219-221
- Bohne AV, Nickelsen J (2016) Metabolic control of chloroplast gene expression: an emerging theme. Mol Plant 10: 1-3
- Leister D (2016) Photosynthesis: Complex flexibilities. Nat Plants 2: 16135
- Richter AS, Hochheuser C, Fufezan C, Heinze L, Kuhnert F, Grimm B (2016) Phosphorylation of GENOMES UNCOUPLED 4 alters stimulation of Mg chelatase activity in angiosperms. Plant Physiol 172: 1578-1595